Stomatal characterization
Table 2 and Fig 1 present the values of DE, NC, NT, AE, IE, REN1, CAL and EXP measured on both the adaxial and abaxial leaf surfaces of the chickpea cultivars. The average stomatal density (DE) across the three cultivars was 14.4 stomata mm
-2, with values ranging from 10 to 20 stomata mm
-2 on the adaxial surface. In terms of stomatal area (AE), the cultivar Combo-743 exhibited the highest values, averaging 512,437.1 µm
2 on the abaxial surface and 502,981.1 µm
2 on the adaxial surface. Conversely, Sinalomex-2018 recorded the lowest AE values, with averages of 238,113.8 µm
2 on the adaxial surface and 243,533.4 µm
2 on the abaxial surface. Notably, Sinalomex-2018 also showed the highest total number of trichomes (NT) per mm
2, with 5.4 on the adaxial surface and 4.9 on the abaxial surface.
Pearson correlation analysis
Table 3 presents the correlation coefficients (r) between stomatal traits (DE, NC, NT, AE) and yield-related variables (REN1, CAL and EXP) on both the adaxial and abaxial. On the adaxial side, a significant negative correlation (r = -0.65, p<0.05) Was observed between trichome number (NT) and stomatal area (AE), similar to the abaxial side where the correlation was even stronger (r = -0.73). Additionally, a moderate and significant negative correlation was found between NT and REN1 on the adaxial surface (r = - 0.59, p = 0.04), suggesting that a higher trichome density may be associated with reduced seed yield.
Principal component analysis
For the abaxial leaf surface, Principal Components 1 (Dim1) and 2 (Dim2) explained 70.2% of the total observed variability with Dim1 accounting for 39.1% and Dim2 for 31.1% (Fig 2b). The most influential variables in Dim1 were NT, contributing 21.37% with a correlation of r = 0.76 and AE, contributing 25.47% with a strong negative correlation (r = -0.83). In Dim2, the key contributors were seed caliber (CAL), with 26.60% contribution and r = 0.76 and NC, contributing 17.81% with r = 0.62. On the adaxial surface, Dim1 explained 37.3% of variance, while Dim2 accounted for 25.5%, totaling 62.8% of the variability (Fig 2a). NT was the most significant contributor to Dim1 (31.86%, r = 0.91), followed by AE (25.85%, r = -0.82). In Dim2, CAL contributed 29.72% (r = 0.73) and REN1 contributed 19.12% (r = -0.58). These results suggest that Dim2 is associated with cultivars producing large seeds (CAL) but slightly lower yields (REN1), indicating a potential trade-off between seed size and yield.
Cluster analysis
Hierarchical clustering divided the chickpea cultivars into two distinct groups on both the adaxial and abaxial leaf surface. This classification was based on clustering criteria including CCC (-0.0722), Pseudo T
2 (1.6987) and Gap Statistic (-1.0859) for the abaxial surface and CCC (-0.8156), Pseudo T
2 (0.2666) and Gap Statistic (-0.0446) for the adaxial surface. This clustering structure accounted for 74% of the total estimated variance, as indicated by the coefficient of determination (R
2 = 0.74). On the abaxial surface (Fig 3a), two clusters were identified: Cluster 1 (C1; red) grouped Blanco Sinaloa-92 and Combo-743, while Cluster 2 (C2; blue) consisted solely of Sinalomex-2018. Cultivars in C1 exhibited higher values for DE, CAL, NC and EXP, whereas C2 was characterized by elevated NT, AE and REN1 values. A similar two-cluster pattern was observed on the adaxial surface (Fig 3b), though with a different distribution. Conversely, Cluster 2 (C2; blue) comprised the cultivars Blanco Sinaloa-92 and Combo-743. These cultivars exhibited higher values for DE, CAL, NC, AE and REN1.
Multivariate analysis (MANOVA) and univariate analysis (ANOVA)
Multivariate analysis (MANOVA) and mean comparisons (ANOVA) between the identified clusters (C1 and C2) on both the abaxial and adaxial leaf surfaces revealed significant differences (p<0.05) in stomatal and seed yield traits among the chickpea cultivars. On the abaxial side, clusters differed notably in NT and AE. Cluster C2 exhibited a higher NT (5.4±0.5) compared to C1 (2.9±0.4), suggesting enhanced resistance to environmental stressors such as drought and solar radiation. In contrast, C1 showed significantly greater AE (5504,777.6±11,327.6) than (241,589.7±160,119.7), indicating potentially higher gas exchange efficiency and, consequently, greater seed yield (C1: 1988.1±50.1 vs. C2: 1790.0±70.8).
Similar trends were observed on the adaxial leaf surface, though with notable differences. C1 exhibited a higher NT (5.8±0.4) compared to C2 (3.2±0.3), suggesting enhanced protection against environmental stressors. However, C1 also showed a significantly smaller AE (235,618.4± 18,945.0) than C2 (479,528.6±13,396.2), indicating that cultivars in C2 may possess greater gas exchange efficiency. Unlike the abaxial surface, C2 on the adaxial side demonstrated higher REN1 (1988.1±50.1) compared to C1 (1790.0±70.1).
Stomatal characterization
Stomatal characterization is a vital tool for understanding plant physiological adaptations to environment conditions (
Alvarez-Holguín et al., 2018). Traits such as DE and AE are key indicators of gas exchange capacity and transpiration regulation (
Márquez-Godoy et al., 2024). The cultivar Sinalomex-2018 exhibited the smallest AE values, suggesting efficient gas exchange and improved water use efficiency. Smaller stomata limit water vapor loss to the atmosphere, making them a valuable trait for improving drought tolerance
(Karabourniotis et al., 2020). In a related study,
Noperi-Mosqueda et al. (2025) evaluated physiological traits, photosynthetic efficiency and stomatal activity in three maize (
Zea mays) hybrids (P1898, P1445 and P1382) under drought-pone conditions. They found that hybrid P1382, which had smaller stomatal sizes (1000 μm
-2), achieved higher seed yield and better water use.
Additionally, Sinalomex-2018 showed higher NT on both leaf surfaces. Trichomes are specialized epidermal structures that provide protection against insects and herbivory and contribute to abiotic stress tolerance
(Karabourniotis et al., 2020). According to
Karabourniotis et al., (2020), trichomes also shield plants from UV-B radiation through the deposition of phenolic compounds, acting as optical filters that protect leaf tissues and preserve photosynthetic function.
Pearson correlation analysis
A negative correlation between NT and AE was observed on both the adaxial and abaxial leaf surfaces, suggesting that an increased number of trichomes is associated with reduced stomatal size. This pattern may reflect an adaptive strategy to mitigate water stress. Trichomes, as specialized epidermal structures, can enhance water retention by acting as physical barriers that limit transpiration, particularly under conditions of intense solar radiation
(Adebooye et al., 2012). Supporting this,
Galdon-Armero et al. (2018) conducted a comparative study on tomato (
Solanum lycopersicum) under well irrigated and water-deficit conditions, demonstrating that water stress led to increased trichome density and reduced stomatal size. The presence of more trichomes, especially on leaf surface, reduces direct exposure to wind and light, thereby limiting stomatal expansion. However, this protective mechanism may come at a cost: excessive trichome density can reduce gas exchange and photosynthetic efficiency
(Amada et al., 2023), which may explain the observed negative correlation between NT and REN1.
Conversely, the positive correlation between AE and REN1 indicate that larger stomatal size is associated with higher chickpea yield, likely due to improved gas exchange efficiency that enhances photosynthesis
(Harrison et al., 2019), leading to greater biomass accumulation and seed production. Previous studies in grasses and maize species (
Alvarez-Holguín et al., 2018;
Noperi-Mosqueda et al., 2025) have similarly shown that genotypes with larger stomata tend to exhibit higher photosynthetic rates, provided water availability is sufficient.
Finally, the negative association between AE and EXP suggests a trade-off: while large stomata may enhance seed yield, they may limit seed size. This implies differential allocation of photo assimilates within the plant. Greater stomatal area supports higher photosynthetic activity, which can increase the number of seeds (
Roche, 2015), but may reduce carbohydrate allocation for grain filling, thereby limiting seed size
(Lawson et al., 2014). In a similar study,
Li et al., (2023) show that a higher photosynthetic rate increased yield (r = 0.41, P<0.01) in wheat (
Triticum aestivum) but limited plant height (r = -0.63, P<0.01), flag leaf growth (r = -0.49, P<0.01) and number of ears per m
2 (r = -0.22, P<0.01). This balance implies that, under certain conditions, the plant must decide how to allocate available resources, which can affect grain number size and quality (
Mora-Ramirez et al., 2021).
Cluster analysis
The clustering pattern of the evaluated chickpea cultivars (Fig 3) reflects underlying genetic differences, aligning with findings reported by
Choudhary et al., (2012), (Naghavi et al., 2012) and
De Giovanni et al. (2016). Notably, Blanco Sinaloa-92 and Combo-743 clustered together, suggesting a shared genetic origin likely resulting from the use of closely related parental lines during their development. This contrasts with Sinalomex-2018, which formed a separate cluster, indicating a distinct genetic background. Such divergence is partly attributed to the limited genetic diversity within germplasm used in local breeding programs (
Valadez-Moctezuma et al., 2020). Blanco Sinaloa-92 was developed through crosses between Spain cultivars and lines from Mexican breeding programs and it saves as the maternal parent of Combo-743, further confirming their genetic relationship. This highlights the high degree of relatedness among Kabuli chickpea cultivars in Mexico, which may explain the moderate variation observed in stomatal traits.