In this investigation, out of the 51 fecal samples analyzed, 4 (7.8%, 4/51) tested positive for
Cryptosporidium spp. and 9 (17.6%, 9/51) tested positive for
E.
bieneusi in dogs. While the positive rates of
Cryptosporidium varied in different sites, age groups and deworming statuses, no significant differences were observed. Similarly, although the positive rates of
E.
bieneusi also varied, with notably high rates in the group without deworming (42.9%, 3/7), the differences for positive rates of
E.
bieneusi were not statistically significant among the different sites, age groups and deworming statuses. Notably, no positive samples for
E.
bieneusi were found in dogs from pet market (Table 1).
3 out of 38 fecal samples (7.9%, 3/38) tested positive for
Cryptosporidium spp. and 4 samples (10.5%, 4/38) tested positive for
E.
bieneusi in cats. While the positive rates for
Cryptosporidium and
E.
bieneusi varied based on site, age and deworming status, the highest positive rate for
Cryptosporidium spp. was observed in hospitals (11.8%, 2/17) and for
E.
bieneusi in no deworming group (22.2%, 2/9). However, no significant differences were found among different sites, age groups and deworming statuses. Surprisingly, cats in pet market and aged<12 months were neither infected with
Cryptosporidium spp. nor
E.
bieneusi (Table 2).
All 4
Cryptosporidium-positive samples in dogs were successfully sequenced and identified as
C.
canis. Among the 4
C.
canis isolates identified in present study, 3 were identical to the reference sequence (MN696800.1) from dogs in Guangzhou, southern China, with one nucleotide deletion.Meanwhile, there were two nucleotide deletions, a C to G substitution and two C to A nucleotide substitutions in the remaining isolate compared with this reference sequence (MN696800.1). Out of the 3 positive samples were sequenced for
Cryptosporidium spp., only
C.
felis was identified. Among the 3
C.
felis isolates, one was identical to a reference sequence from UK (OP935207.1) with 100% homology. One was 99% identical to an isolate from a cat in China (KJ194110.1), with one single nucleotide substitution, the last isolate had 99% similarity to another reference sequence (KX168415.1) (Fig 1).
Of the 9
E.
bieneusi-positive samples sequenced successfully in dogs, three known genotypes, namely PtEb IX, CD 9 and NED 3genotypes, were identified using the ITS gene locus sequencing method. PtEb IX (66.7%, 6/9)was the most predominant genotype found in dog isolates across all groups except the pet market. CD9 (22.2%, 2/9) was detected in samples from shelters and hospitals, while genotype NED3 (11.1%, 1/9) was only found in one specimen. Type IV was the only genotype identified in the 4 positive samples analyzed for
E.
bieneusi in cats (Fig 2).
Analysis from the perspective of concurrent infections, there was one positive-sample co-infected with
C.
canis and NED3 genotype of
E.
bieneusi in dogs, two positive-samples were concurrently infected with Type IV genotype of
E.
bieneusi and
C.
felis in cats, the remaining positive-samples were mono-infections.
Cryptosporidium spp. and
E.
bieneusi are crucial zoonotic pathogens widely found in humans and various animals across different regions. Dogs and cats, commonly kept as pets in many households, have close contact with humans and could serve as important reservoirs of zoonotic pathogens, posing a potential risk for human health.
The results of this investigation revealed that the positive rate of
Cryptosporidium spp. was 7.8% (4/51) in dogs and 7.9% (3/38) in cats respectively, which was higher than that in Poland (3.4%, 2%) (
Piekara-Stêpiñska et al., 2021), Egypt (1.8%, 6.0%)
(Elmahallawy et al., 2023), Yunnan in China (4.6%, 0.6%)
(Wang et al., 2021), but was consistent with that in Brazil (7.8%, 5.4%) (de
Oliveira et al., 2021), in Turkey (7.14%, 9.09%), (
Ipek, 2023), in Saudi Arabia (8.5%) (
Malk, 2021), Guangdong (6.9%, 6.2%)
(Li et al., 2019), Shanghai (8.0%, 3.8%
(Xu et al., 2016) and other regions in China.The discrepancy in
Cryptosporidium infection in pets may be related to factors, like sample sizes,detection methods, geographic locations and living conditions.
Enterocytozoon bieneusi has been increasingly found in human and broad animals, including diverse intimate companions. In this survey, the positive rate of
E.
bieneusi was 17.6% in dogs and 10.5% in cats respectively, which was comparable to the positive rate of dogs (18.8%, 136/724) and cats (14.1%, 22/156) examined respectively in Sichuan province in China
(Zhong et al., 2021), but was much higher than that in dogs (0.8%, 2/237) and cats( 3.0%, 3/99) in Northern Spain
(Dashti et al., 2019) and was much lower than that in stray cats in Türkiye (50.15%, 170/339)
(Erkunt et al., 2023). Variations in
E.
bieneusi prevalence among dogs and cats in different studies can be attributed to various risk factors such as living habits, age, sex,sample sizes and sources of the animals.
The findings, only
C.
canis identified in dogs and
C.
felis in cats respectively in present survey, were consistent with previous research. However, in some other recent records, there were presence of several other
Cryptosporidium species occasionnally infecting dogs and cats, like
Cryptosporidium parvum,
Cryptosporidium ubiquitum,
Cryptosporidium muris and the
Cryptosporidium rat genotype IV
(Gil et al., 2017; Li et al., 2019). C.
canis and
C.
felis, generally regarded as host-specific pathogens, were commonly detected in some human cases worldwide and mainly found in immunocompromised individuals and low-income countries
(Yang et al., 2021). The result suggests that people should take protective measures to minimize zoonotic pathogen transmission from their pets.
There were 4 genotypes of
E.
bieneusi, PtEb IX, CD9, NED3 in dogs and Type IV in cats identified in this study. PtEb IX, which was the main
E.
bieneusi genotype and regarded as the dog-specific with widespread globally in dogs
(Xu et al., 2016; Wang et al., 2020), was also the dominant genotype (6/9) in present survey. However, CD9 was the second dominant genotype in this survey (2/9), which was also the predominant
E.
bieneusi genotype in Sichuan province
(Zhong et al., 2021). NED3, identified in this study,is recognized as a dog-adapted genotype.
Type IV was the sole genotype identified in adult cats in this study, this consequence was also consistent with its prevalence in cats from other sources (
Sürgeç et al., 2023).This genotype, known for its pathogenicity in humans and global presence, has also been found in a wide variety of animals, such as
Lynx pardinus (
Ávalos et al., 2024), foxes and raccoon dogs
(Zhang et al., 2021; Chen et al., 2023), zoo animals
(Zhang et al., 2021), pigeons (
Holubová et al., 2024) and domestic animals. Moreover, there were some reports about Type IV of
E.
bieneusi infections in humans in Shanghai
(Jiang et al., 2023), Ningbo
(Liu et al., 2023), southern China and northeast Egypt respectively
(Naguib et al., 2022). These findings suggest that animals carrying zoonotic Type IV genotype may serve as significant sources of human microsporidiosis. In contrast, the PtEb IX genotype was predominantly found in cats in other research
(Wang et al., 2020).