Study area
Odisha (17°49‟ to 22°34‟N and 81°27‟ to 87°29‟E) is one of the states located in the east coast regions of India, having 1,55,707 km
2 geographical area. The costal belt of Odisha falls under the Tropical Savanna (Aw) climate type as per the Koppen-Geiger climate classification, characterized by distinct wet and dry seasons, high temperatures and significant rainfall during the monsoon season. (
Kottek et al., 2006). Eight numbers of costal districts were selected for the current study namely Khordha (20°11'N, 85°40'E), Cuttack (20°28'N, 85°54'E), Puri (19°48'N, 85°52'E), Ganjam (19°22'N, 85°06'E), Nayagad (20°08'N, 85°08'E), Bhadrak (21°03'N, 86°33'E), Jajpur (20.83'N, 86.33'E) and Jagatsingpur (20.2549°N, 86.1706°E) (Fig 1).
Sampling of animal
The investigation spanned from July 2024 to June 2025. The sample were collected from dogs with history/presence of tick infestation and with or without clinical signs of Babesiosis, such as fever, lymphadenopathy, generalized or limb weakness, respiratory distress, Jaundice, petechiae on skin and visible mucous membrane and bleeding disorder. A total of 280 blood samples presented to Teaching Veterinary Clinical Complex, Odisha University of Agriculture and Technology, Bhubaneswar from eight districts of Odisha were collected aseptically from the cephalic/saphenous vein of dogs in EDTA vials and utilized immediately for preparation of the thin blood smears and hematological analysis and then kept at -80°C for further use for DNA extraction. The consent for blood collection was obtained from the dog owners for the diagnostic purposes by registered professionals following the guidelines for blood collection stipulated by Committee for the Control and Supervision of Experiments on Animals (CCSEA) and the approval was obtained from Institute of Animal Ethical Committee, College of Veterinary Sc. and Animal Husbandry, OUAT, Odisha (833/IAEC, dated- 7-10-2023) for conducting the study. The data about location, sex, age, breed, tick infestation, acaricidal treatment and presence of outdoor activity were recorded and analyzed as possible risk factors.
Microscopy
Thin blood smears were prepared and subsequently subjected to Giemsa staining and then viewed under oil immersion objective lens to detect the presence of large globular piroplasm of
Babesia vogeli and small dot shaped piroplasm of
Babesia gibsoni in the erythrocyte for evidence of infection.
Molecular analysis
The PCR analysis was carried out from genomic DNA, extracted from blood sample of individual dogs using the DNeasy ® Blood and Tissue kit (Qiagen, Hilden, Germany) following manufacturer’s instructions with slight modification in terms of quantity of blood used (200 µl) and final elution volume (50 µl). The quality of elutes was examined using a nano spectrophotometer and samples stored at -80°C until further studies.
Individual singleplex PCR assays were initially optimized for each hemoparasite using species-specific primer sets. Subsequently, a multiplex PCR was developed to enable the simultaneous detection and differentiation of the targeted organisms (
B. vogeli and
B. gibsoni) along with IAC and co-infections in a single tube PCR test. Highly infected microscopically positive clinical samples for individual parasites, confirmed by PCR assay, served as positive control while sample obtained from an infection free neonatal puppy was used as negative control. For each PCR, negative control was run together. The details of the oligonucleotide primers used in the study are depicted in Table 1.
A 20 μl volume of singleplex PCR reaction mixture was standardized containing 0.5 μl of each primer (10 μM), 10 μl of multiplex Master Mix (2×) (Qiagen, Germany), 8 μl nuclease-free water and a 1μl aliquot of extracted DNA. The cycling condition of the PCR was set as initial heat activation (95°C for 15 min), denaturation (94°C, 30 sec) -35 cycles, annealing (59-62°C, 90 sec) and extension (72°C, 90 sec) and final extension (72°C, 10 min).
For multiplex PCR, the PCR reaction mixture was standardized containing 0.6 μl of each primer (2 pairs each 10 μM) along with another primer pair targeting canine β-actin gene (β-actin-F: CTGTCCCTGTATGCCTCTG, β-actin-R: ATGTCACGCACGATTTCC) of 218 bp
(Chen et al., 2014), 15 μl of multiplex master Mix (2×) (Qiagen, Germany), a 3 μl aliquot of isolated DNA and nuclease-free water was added to make up the final volume to 30 μl. Concentration of primers and annealing temperature were adjusted to reach the optimum conditions. The thermal profile for PCR amplification is used as initial heat activation (95°C , 15 min) denaturation at (94°C , 30 sec)- 35 cycle, annealing (60°C, 90 sec) and extension (72°C , 90 sec) and final extension (72°C , 10 min).
Thermal Cycler (T100TM Thermal Cycler, Bio-Rad, USA) were used for all the amplifications. PCR products were subjected to horizontal electrophoresis on a 1.5% agarose gel containing ethidium bromide dye in Tris-acetate-EDTA (TAE) buffer at 85V for 60 min along with 100 bp DNA ladder. The amplifications were checked and documented under UV light gel documentation system (Gel Doc TM EZ Imager, Bio-Rad, Hercules, CA, USA).
Validation of developed m-PCR assay
DNA samples isolated from the 3 numbers of positive control dogs for each parasite were used to validate the diagnostic efficiency of the multiplex PCR assay. Further, 61 random clinical samples from field with history of tick infestation, were used for singleplex PCR assays targeting the specific parasite as well as for the standardized multiplex PCR assay to evaluate the sensitivity and specificity of the developed multiplex assay. Later, selected mPCR amplified products from field samples (2 each for a parasite species) were also sequenced for further confirmation.
Sequencing and phylogenetic analysis
The positive samples, which showed a distinct bright band in multiplex PCR, were purified from gels by QIAquick® Gel Extraction Kit (Qiagen, GmbH, Germany) as per the manufacturer’s instructions and subsequently sequenced by Eurofins Laboratories, Bangalore. The obtained sequences were aligned using MEGA version 12 and the representative sequences were submitted to the GenBank database under the accession number (PV329704-
B. gibsoni), (PV329651-
B. vogeli). The partial 18S rRNA gene sequence was compared with previously reported sequences available in GenBank. Multiple sequence alignment was performed using the MUSCLE algorithm and similarity with homologous sequences was assessed using nucleotide (nBLAST) Basic Local Alignment Search Tool. Sequence identity analysis was carried out with the Clustal V method, while phylogenetic relationships were inferred from the nucleotide alignments by applying the maximum-likelihood method with 1000 bootstrap replications in MEGA 12
(Kumar et al., 2024).
Statistical analysis
The statistical analysis was implemented through SPSS version 22 statistical windows software program. The developed multiplex PCR was validated through calculation of McNemar’s test p value, Kappa value, specificity and sensitivity with 95% confidence interval by comparing the field DNA samples with its singleplex PCR counterpart. The risk factors association with prevalence of haemoparasitic infections was determined by the Chi-square test, with acceptable probability of error up to 5% (p<0.05). The Chi-square value (χ2), degrees of freedom and
P-values (≤0.05) were evaluated to determine the strength of association between variables. Analyzed risk factors included locality (Khordha, Cuttack, Puri, Ganjam, Nayagad, Bhadrak, Jajpur and Jagatsingpur), sex (male and female), age groups (<1, 1-6 and >6 years), breeds (Non descriept, Golden retriever, Labrador, Spitz and others), tick infestation and outside activity (nil, limited, active).