Place and time of the work
The work was carried out in the Department of Veterinary Microbiology, College of Veterinary Sciences and Animal Husbandry, Central Agricultural University, Selesih, Aizawl, Mizoram. The work on the clone preparation and confirmation was carried out during 2020 (March to July) and the indirect ELISA part was done in 2024 (November to December).
GP5 gene amplification and cloning in expression vector
The virus isolate used for the full-length GP5 gene amplification in the present study was obtained from the repository of the Department of Veterinary Microbiology, College of Veterinary Sciences and Animal Husbandry, Mizoram (GenBank accession number MN928985)
(Akter et al., 2021). Expression of GP5 protein was performed using Expresso Rhamnose SUMO Cloning and Expression System kit (Cat. No. 49013-1, Lucigen) and
E. cloni 10G competent cells provided with the kit was used for transformation and expression. Virus isolated in Porcine Alveolar Macrophage cells (PAM), maintained in the department
(Akter et al., 2021), was used for RNA extraction. RNA extraction was carried out from the virus isolated using the QIAamp Viral RNA extraction kit (Cat. No. 52904 QIAGEN) as per the manufacturer’s protocol. The cDNA was synthesized using the Maxima H Minus First Strand kit (Cat. No. K1651, Thermo Scientific) as per the manufacturer’s protocol. The full-length GP5 gene was amplified and cloned in a TA cloning vector and sequenced by outsourcing. The annotated sequence was submitted to GenBank for accession number (MN928985). Using the same cDNA full-length GP5 gene was amplified using polylinker primer pair (Table 1) for prokaryotic cloning and expression purpose. For this, the full-length GP5 gene was amplified by using
Pfu DNA polymerase and GP5 specific primers with polylinker (vector adaptor sequence) to have 18 nucleotides homology of the vector sequence. A reaction volume of 100 µl was prepared by using 1 µl of 2 U/µl
Pfu DNA polymerase enzyme (Cat. No. EP0572, Thermo Scientific) and GP5 was amplified at an annealing temperature of 56.1
oC. The PCR product was run in 1.5% agarose gel electrophoresis and the UV unexposed product was purified from the gel by using GeneJET Gel Extraction Kit (Cat. No. K069, Thermo Scientific) as per the manufacturer’s protocol. The purified product was quantified by spectrophotometer (Thermo Scientific Multisakn GO, Thermo Fisher Scientific) and the purified GP5 was cloned into the pRham N-His SUMO Kan vector and transformed to
E. cloni 10G competent cells by heat-shock method which was plated on LB agar containing kanamycin (30 µg/ml) and incubated for 18 hours at 37
oC. Positive clone detection was performed by orientation PCR at an annealing temperature of 55
oC utilizing the primers provided with the kit, SUMO Forward Primer and pETite Reverse Primer (50 pmol/ µl).
GP5 protein expression and detection
One of the positive clones was used for induction of GP5 protein expression. For this, the transformed
E. cloni 10G bacteria were grown in three tubes each in 10 ml LB kanamycin broth. The tubes were incubated at 37
oC at 120 rpm till the optical density value reached 0.6 and one tube was shifted at 4
oC for uninduced control. D-glucose at a final concentration of 0.05% and L-rhamnose at a final concentration of 0.2% were added with the culture of the other two tubes for early autoinduction. Cells were incubated at 37
oC at 120 rpm for 4 hours and 8 hours. After induction, 5 ml of culture media from each of the two tubes were separated and stored for purification. The rest of the 5 ml cultures were used for lysate preparation. For that induced and uninduced control cells were harvested by centrifugation at 10,000 × g for 10 min and pellets were washed twice with PBS and finally, the pellets were resuspended in 1X NRSB (non-reducing sample buffer). The samples were sonicated using an ultrasonicator (Ultrasonic Processor, UP100H, hielscher). The sonicated samples were incubated for 15 min at room temperature, then boiled for 5 min and then incubated at room temperature for 15 min followed by centrifugation at 13,000 × g for 15 min and the supernatants were separated to use for SDS-PAGE (Sodium dodecyl sulfate-polyacrylamide gel electrophoresis). SDS-PAGE analysis was carried out using 12% resolving gel and 4% stacking gel. Protein samples of both 4 hours and 8 hours induction, as well as uninduced control lysates, were run in the gel along with a standard protein marker (Cat. No. MBT092, Himedia). The electrop-horesis was run for 3 hours at a constant 70 volts. After completion of SDS-PAGE, the gel was stained with Coomassie Brilliant Blue R-250 solution for 1 hours followed by destaining for overnight.
Purification of GP5 protein
Purification of the GP5 protein was performed using the His-Spin Protein Miniprep kit (Cat. No. P2001, The Epigenetics Company, Zymo Research) as per the manufacturer’s protocol as the targeted protein contains a 6× histidine-tag. For this, the 5 ml cultures of each 4 hours and 8 hours induction were used for harvesting the cells pellet by centrifugation at 10,000 × g for 10 min. Then cells were washed and resuspended in 1 ml His-Binding Buffer. Cells were then sonicated using the ultrasonicator and centrifuged at 13,000 × g for 5 min. Supernatants were used for purification of the 6× histidine tagged GP5 protein and were eluted with 150 µl elution buffer. Further purified proteins were quantified by Bradford dye assay (BDA) using bovine serum albumin (BSA) as standard protein. The purified proteins were run in the SDS-PAGE gel for checking the purity.
Western blot analysis
Western blotting was performed by using a semi-dry horizontal trans-blotter (AE 6675, ATTO) following the manufacturer’s protocol. The 12% resolving gel and 4% stacking gel were prepared and purified 6× His tagged SUMO GP5 proteins both 4 hours and 8 hours induction were used in duplicate for SDS-PAGE, one half was used for staining and another half was used for trans blotting. After completion of SDS-PAGE, half of the gel was used for sandwich preparation using absorbent papers 3 numbers from the bottom, on top of that nitrocellulose membrane and then SDS-PAGE gel and on top 3 absorbent papers. All the membranes were equilibrated in the transfer buffer for around 5 min. The trans-blotter was run at a voltage of 24 volts for 3 hours. After completion of the transfer, the nitrocellulose membrane (NCM) was blocked by using a blocking buffer (0.5% bovine serum albumin, 5% skim milk powder, 0.2% Tween-20 in PBS) at 4
oC overnight. After discarding the blocking buffer the next day, the NCM was washed thoroughly with PBS-T. The commercial PRRSV-GP5 polyclonal antibody raised in rabbit (Cat. No. bs-4504R, Bioss Antibodies, USA) was used as the primary antibody at 1:500 dilution and incubated at room temperature for 1 hour. After washing 3 times with PBS-T, NCM was treated with secondary antibody conjugate (Cat. No.G×4501PC2R, Peroxidase conjugate Goat-anti Rabbit IgG) at 1:500 dilution and incubated at room temperature for 30 min. After washing with PBS-T, DAB substrate with nickel (Ref. no. SK-4100, Vector Laboratories) was used as chromogen and incubated at room temperature in dark for 15 min. After incubation, the NCM was washed with distilled water and dried at room temperature.
Indirect ELISA
Application of the recombinant GP5 (rGP5) protein as coating antigen was explored for indirect ELISA. Ten positive and 10 negative pig serum samples which were tested by Porcine Reproductive and Respiratory Syndrome virus Antibodies ELISA Kit (Cat no.: E-AD-E006, Elabscience) were used for indirect ELISA. MaxiSorp Nunc ELISA plate (Cat. No.: 442404, Thermo Scientific) was coated with recombinant GP5 protein @ 200 ng/well and 500 ng/well diluted in coating buffer (0.05 M Carbonate bicarbonate buffer, pH 9.6) and incubated overnight at 4
oC. After overnight coating, the plate was washed with wash buffer (PBS-T, PBS with 0.05% Tween-20) and then blocking was performed by blocking buffer (3% BSA in PBS) and incubated for 1 hour at 37
oC. The positive and negative sera at 1:10 dilution were added and incubated for 1 hour at 37
oC. Anti-Pig IgG (whole molecule)-Peroxidase antibody produced in rabbit (Cat. no.: A5670, Sigma Aldrich) at a dilution of 1:2500 was used as secondary antibody conjugate and incubated for 45 min at 37
oC. After each step, the plate was washed three times with PBS-T. As substrate, the TMB (3,3’,5,5’-tetramethylbenzidine) (Cat. No.: T0440, Sigma) was used and incubated for 15 min in dark at room temperature and the reaction was stopped by 1M sulfuric acid. Absorbance was taken at 450 nm wavelength keeping substrate control as zero.