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Current IssueEditorial BoardOnline First Articles
Bhartiya Krishi Anusandhan Patrika
Print ISSN: 0303-3821
Online ISSN: 0976-4631
NASS Rating
4.95

Chief Editor:
Yashpal Singh Malik
ICAR-Indian Veterinary Research Institute (ICAR-IVRI)
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Reviewer Article

Bhartiya Krishi Anusandhan Patrika, volume 36 issue 1 (march 2021) : 18-24

Tissue Specific Transcriptome Profiling and Genetic Region Marker Discovery of Indian Sesame (Sisemum indicum L.)

Sarika Jaiswal, Rukam S. Tomar, Komal Vadukool, Uma, Meenu Chopra, Visha M. Rathod, M.V. Parakhia, M.A. Iqbal, Anil Rai, Dinesh Kumar
1Center for Agricultural Bioinformatics, ICAR - Indian Agricultural Statistical Research Institute, New Delhi-110 012, India.

  • Submitted19-01-2021|

  • Accepted16-06-2021|

  • First Online 26-06-2021|

  • doi 10.18805/BKAP260

Cite article:- Jaiswal Sarika, Tomar S. Rukam, Vadukool Komal, Uma, Chopra Meenu, Rathod M. Visha, Parakhia M.V., Iqbal M.A., Rai Anil, Kumar Dinesh (2021). Tissue Specific Transcriptome Profiling and Genetic Region Marker Discovery of Indian Sesame (Sisemum indicum L.). Bhartiya Krishi Anusandhan Patrika. 36(1): 18-24. doi: 10.18805/BKAP260.

ABSTRACT

Sesame (Sesamum indicum L.), is rich source of oil, protein and potent antioxidants with wide applications. Molecular approach can be of great use for trait improvement as well more availability for this crop. The present work aims at tissue specific transcriptome profiling along with biochemical pathway analysis and genic region putative marker discovery. We report 14389, 9465 and 5490 DEGs in root, leaf and flower-bud tissues, respectively. 135, 113 and 120 cellular metabolic or signaling pathways having common 118 pathways were found in root-leaf (RL), leaf-flower (LF) and flower-root (FR), respectively. 218, 170 and 180 transcription factors were identified in root, leaf and flower transcriptome, respectively. Among DEGs, microRNA targets predicted were 534, 376 and 173 in root, leaf and flower, respectively. Genic region repeat analysis revealed 379 SSR. Further variant analysis revealed 3371, 5439 and 4975 SNPs and 2257, 2403 and 2411 INDELs in root, leaf and flower, respectively. The present study will aid in understanding the major biochemical pathways operating in different tissues. Genic region putative marker discovery can be a valuable genomic resource for future crop improvement program.

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